3U95 image
Deposition Date 2011-10-17
Release Date 2012-09-26
Last Version Date 2024-03-20
Entry Detail
PDB ID:
3U95
Keywords:
Title:
Crystal structure of a putative alpha-glucosidase from Thermotoga neapolitana
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 31
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Glycoside hydrolase, family 4
Gene (Uniprot):CTN_1830
Chain IDs:A, B, C, D, E, F
Chain Length:477
Number of Molecules:6
Biological Source:Thermotoga neapolitana
Ligand Molecules
Primary Citation
Crystal structure and thermostability of a putative alpha-glucosidase from Thermotoga neapolitana
Biochem.Biophys.Res.Commun. 416 92 98 (2011)
PMID: 22093829 DOI: 10.1016/j.bbrc.2011.11.002

Abstact

Glycoside hydrolase family 4 (GH4) represents an unusual group of glucosidases with a requirement for NAD(+), Mn(2+), and reducing conditions. We found a putative α-glucosidase belonging to GH4 in hyperthermophilic Gram-negative bacterium Thermotoga neapolitana. In this study, we recombinantly expressed the putative α-glycosidase from T. neapolitana, and determined the crystal structure of the protein at a resolution of 2.0Å in the presence of Mn(2+) but in the absence of NAD(+). The structure showed the dimeric assembly and the Mn(2+) coordination that other GH4 enzymes share. In comparison, we observed structural changes in T. neapolitana α-glucosidase by the binding of NAD(+), which also increased the thermostability. Numerous arginine-mediated salt-bridges were observed in the structure, and we confirmed that the salt bridges correlated with the thermostability of the proteins. Disruption of the salt bridge that linked N-terminal and C-terminal parts at the surface dramatically decreased the thermostability. A mutation that changed the internal salt bridge to a hydrogen bond also decreased the thermostability of the protein. This study will help us to understand the function of the putative glucosidase and the structural features that affect the thermostability of the protein.

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Primary Citation of related structures