3U82 image
Deposition Date 2011-10-15
Release Date 2012-03-21
Last Version Date 2024-11-20
Entry Detail
PDB ID:
3U82
Title:
Binding of herpes simplex virus glycoprotein D to nectin-1 exploits host cell adhesion
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.16 Å
R-Value Free:
0.34
R-Value Work:
0.32
R-Value Observed:
0.32
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein D
Gene (Uniprot):gD
Chain IDs:A
Chain Length:291
Number of Molecules:1
Biological Source:Human herpesvirus 1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Poliovirus receptor-related protein 1
Gene (Uniprot):NECTIN1
Chain IDs:B
Chain Length:317
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Binding of herpes simplex virus glycoprotein D to nectin-1 exploits host cell adhesion.
Nat Commun 2 577 577 (2011)
PMID: 22146396 DOI: 10.1038/ncomms1571

Abstact

Multiple surface envelope proteins are involved in the human herpes simplex virus type 1 entry and fusion. Among them, glycoprotein D (gD) has an important role by binding to the host receptors such as herpes virus entry mediator and nectin-1. Although the complex structure of gD with herpes virus entry mediator has been established, the binding mode of gD with the nectin-1 is elusive. Nectin-1 is a member of the immunoglobulin (Ig)-like (three Ig-like domains) cell adhesion molecules and is believed to form a homodimer to exert its functions. Here we report the complex structure of gD and nectin-1 (three Ig domains), revealing that gD binds the first Ig domain of nectin-1 in a similar mode to the nectin-1 homodimer interaction. The key amino acids responsible for nectin-1 dimerization are also used for gD/nectin-1 binding. This result indicates that binding of gD to nectin-1 would preclude the nectin-1 dimerization, consequently abolishing its cell adhesion function.

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Primary Citation of related structures