3U6B image
Entry Detail
PDB ID:
3U6B
Title:
Ef-tu (escherichia coli) in complex with nvp-ldi028
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2011-10-12
Release Date:
2012-02-08
Method Details:
Experimental Method:
Resolution:
2.12 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Elongation factor Tu 1
Chain IDs:A, B
Chain Length:394
Number of Molecules:2
Biological Source:Escherichia coli
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
BB6 C CYS (2Z)-2-AMINO-3-SULFANYLBUT-2-ENOIC ACID
BB7 C CYS ?
BB8 C PHE (2S,3S)-BETA-HYDROXY-PHENYLALANINE
BB9 C CYS ?
MEN C ASN N-METHYL ASPARAGINE
MH6 C SER 3-HYDROXY-2-IMINOPROPANOIC ACID
Peptide-like Molecules
PRD_001074
Primary Citation
Antibacterial optimization of 4-aminothiazolyl analogues of the natural product GE2270 A: identification of the cycloalkylcarboxylic acids.
J.Med.Chem. 54 8099 8109 (2011)
PMID: 21999529 DOI: 10.1021/jm200938f

Abstact

4-Aminothiazolyl analogues of the antibiotic natural product GE2270 A (1) were designed, synthesized, and optimized for their activity against Gram positive bacterial infections. Optimization efforts focused on improving the physicochemical properties (e.g., aqueous solubility and chemical stability) of the 4-aminothiazolyl natural product template while improving the in vitro and in vivo antibacterial activity. Structure-activity relationships were defined, and the solubility and efficacy profiles were improved over those of previous analogues and 1. These studies identified novel, potent, soluble, and efficacious elongation factor-Tu inhibitors, which bear cycloalkylcarboxylic acid side chains, and culminated in the selection of development candidates amide 48 and urethane 58.

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Primary Citation of related structures