ISDA

Deposition Date 2011-10-12

Release Date 2011-11-09

Last Version Date 2024-11-06

Entry Detail

PDB ID:

3U6A

Keywords:

HYDROLASE/HYDROLASE INHIBITOR

Title:

Rational Design and Synthesis of Aminopiperazinones as Beta Secretase (BACE) Inhibitors

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.20 Å

R-Value Free:

0.23

R-Value Work:

0.18

R-Value Observed:

0.18

Space Group:

C 1 2 1

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Beta-secretase 1
Gene (Uniprot):BACE1
Chain IDs:A, B, C
Chain Length:390
Number of Molecules:3
Biological Source:Homo sapiens

UniProt ID:P56817 Pfam ID:PF00026 EC:3.4.23.46

Ligand Molecules

18P

SO4

Primary Citation

Rational design and synthesis of aminopiperazinones as beta-secretase (BACE) inhibitors.

Tresadern, G, Delgado, F, Delgado, O, Gijsen, H, Macdonald, G.J, Moechars, D, Rombouts, F, Alexander, R, Spurlino, J, Van Gool, M, Vega, J.A, Trabanco, A.A.Show

Bioorg.Med.Chem.Lett. 21 7255 7260 (2011)

PMID: 22071305 DOI: 10.1016/j.bmcl.2011.10.050

Abstact

Aminopiperazinone inhibitors of BACE were identified by rational design. Structure based design guided idea prioritization and initial racemic hit 18a showed good activity. Modification in decoration and chiral separation resulted in the 40 nM inhibitor, (-)-37, which showed in vivo reduction of amyloid beta peptides. The crystal structure of 18a showed a binding mode driven by interaction with the catalytic aspartate dyad and distribution of the biaryl amide decoration towards S1 and S3 pockets.

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Primary Citation of related structures