3U4S image
Deposition Date 2011-10-10
Release Date 2012-02-08
Last Version Date 2024-02-28
Entry Detail
PDB ID:
3U4S
Keywords:
OXIDOREDUCTASE/OXIDOREDUCTASE SUBSTRATE
Title:
Histone Lysine demethylase JMJD2A in complex with T11C peptide substrate crosslinked to N-oxalyl-D-cysteine
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.15 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 2
3U4S validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Lysine-specific demethylase 4A
Gene (Uniprot):KDM4A
Chain IDs:A, B
Chain Length:381
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:O75164 Pfam ID:PF02375, PF02373 EC:1.14.11.27
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:HISTONE 3 TAIL ANALOG (T11C Peptide)
Gene (Uniprot):H3C1, H3C2, H3C3, H3C4, H3C6, H3C7, H3C8, H3C10, H3C11, H3C12
Chain IDs:C, D
Chain Length:8
Number of Molecules:2
Biological Source:
UniProt ID:P68431
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
M3L C LYS N-TRIMETHYLLYSINE
Ligand Molecules
08P
NI
ZN
Primary Citation
Linking of 2-Oxoglutarate and Substrate Binding Sites Enables Potent and Highly Selective Inhibition of JmjC Histone Demethylases.
Angew.Chem.Int.Ed.Engl. 51 1631 1634 (2012)
PMID: 22241642 DOI: 10.1002/anie.201107833
Primary Citation of related structures
2OQ6