3U48 image
Deposition Date 2011-10-07
Release Date 2013-04-10
Last Version Date 2024-11-20
Entry Detail
PDB ID:
3U48
Keywords:
Title:
From soil to structure: a novel dimeric family 3-beta-glucosidase isolated from compost using metagenomic analysis
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.21
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:JMB19063
Chain IDs:A, B
Chain Length:775
Number of Molecules:2
Biological Source:compost metagenome
Primary Citation
From soil to structure, a novel dimeric beta-glucosidase belonging to glycoside hydrolase family 3 isolated from compost using metagenomic analysis.
J.Biol.Chem. 288 14985 14992 (2013)
PMID: 23580647 DOI: 10.1074/jbc.M113.458356

Abstact

A recent metagenomic analysis sequenced a switchgrass-adapted compost community to identify enzymes from microorganisms that were specifically adapted to switchgrass under thermophilic conditions. These enzymes are being examined as part of the pretreatment process for the production of "second-generation" biofuels. Among the enzymes discovered was JMB19063, a novel three-domain β-glucosidase that belongs to the GH3 (glycoside hydrolase 3) family. Here, we report the structure of JMB19063 in complex with glucose and the catalytic variant D261N crystallized in the presence of cellopentaose. JMB19063 is first structure of a dimeric member of the GH3 family, and we demonstrate that dimerization is required for catalytic activity. Arg-587 and Phe-598 from the C-terminal domain of the opposing monomer are shown to interact with bound ligands in the D261N structure. Enzyme assays confirmed that these residues are absolutely essential for full catalytic activity.

Legend

Protein

Chemical

Disease

Primary Citation of related structures