3U1T image
Deposition Date 2011-09-30
Release Date 2011-12-28
Last Version Date 2024-11-27
Entry Detail
PDB ID:
3U1T
Keywords:
Title:
Haloalkane Dehalogenase, DmmA, of marine microbial origin
Biological Source:
Source Organism:
unidentified (Taxon ID: 32644)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.17
R-Value Work:
0.13
R-Value Observed:
0.14
Space Group:
P 62
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:DmmA Haloalkane Dehalogenase
Gene (Uniprot):curN
Chain IDs:A, B
Chain Length:309
Number of Molecules:2
Biological Source:unidentified
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
Primary Citation
Structure and activity of DmmA, a marine haloalkane dehalogenase.
Protein Sci. 21 239 248 (2012)
PMID: 22124946 DOI: 10.1002/pro.2009

Abstact

DmmA is a haloalkane dehalogenase (HLD) identified and characterized from the metagenomic DNA of a marine microbial consortium. Dehalogenase activity was detected with 1,3-dibromopropane as substrate, with steady-state kinetic parameters typical of HLDs (K(m) = 0.24 ± 0.05 mM, k(cat) = 2.4 ± 0.1 s(-1)). The 2.2-Å crystal structure of DmmA revealed a fold and active site similar to other HLDs, but with a substantially larger active site binding pocket, suggestive of an ability to act on bulky substrates. This enhanced cavity was shown to accept a range of linear and cyclic substrates, suggesting that DmmA will contribute to the expanding industrial applications of HLDs.

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Primary Citation of related structures