3TVZ image
Deposition Date 2011-09-21
Release Date 2012-07-11
Last Version Date 2024-11-20
Entry Detail
PDB ID:
3TVZ
Keywords:
Title:
Structure of Bacillus subtilis HmoB
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 61 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative uncharacterized protein yhgC
Gene (Uniprot):yhgC
Chain IDs:A, B, C
Chain Length:172
Number of Molecules:3
Biological Source:Bacillus subtilis subsp. spizizenii
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
Primary Citation
Bacillus subtilis HmoB is a heme oxygenase with a novel structure.
Bmb Rep 45 239 241 (2012)
PMID: 22531134 DOI: 10.5483/bmbrep.2012.45.4.239

Abstact

Iron availability is limited in the environment and most bacteria have developed a system to acquire iron from host hemoproteins. Heme oxygenase plays an important role by degrading heme group and releasing the essential nutrient iron. The structure of Bacillus subtilis HmoB was determined to 2.0 A resolution. B. subtilis HmoB contains a typical antibiotic biosynthesis monooxygenase (ABM) domain that spans from 71 to 146 residues and belongs to the IsdG family heme oxygenases. Comparison of HmoB and IsdG family proteins showed that the C-terminal region of HmoB has similar sequence and structure to IsdG family proteins and contains conserved critical residues for heme degradation. However, HmoB is distinct from other IsdG family proteins in that HmoB is about 60 amino acids longer in the N-terminus and does not form a dimer whereas previously studied IsdG family heme oxygenases form functional homodimers. Interestingly, the structure of monomeric HmoB resembles the dimeric structure of IsdG family proteins. Hence, B. subtilis HmoB is a heme oxygenase with a novel structural feature.

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Primary Citation of related structures
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