3TVM image
Entry Detail
PDB ID:
3TVM
Keywords:
Title:
Structure of the mouse CD1d-SMC124-iNKT TCR complex
Biological Source:
PDB Version:
Deposition Date:
2011-09-20
Release Date:
2012-02-01
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Antigen-presenting glycoprotein CD1d1
Chain IDs:A, E
Chain Length:285
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:beta-2-microglobulin
Chain IDs:B, F
Chain Length:99
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Valpha14 (mouse variable domain, human constant domain)
Chain IDs:C, G
Chain Length:209
Number of Molecules:2
Biological Source:Mus musculus, Homo sapiens
Polymer Type:polypeptide(L)
Description:Vbeta8.2 (mouse variable domain, human constant domain)
Chain IDs:D, H
Chain Length:241
Number of Molecules:2
Biological Source:Mus musculus, Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN E ASN GLYCOSYLATION SITE
Primary Citation
Glycolipids that Elicit IFN-gama-Biased Responses from Natural Killer T Cells
Chem.Biol. 18 1620 1630 (2011)
PMID: 22195564 DOI: 10.1016/j.chembiol.2011.10.015

Abstact

Natural killer T (NKT) cells recognize glycolipids presented by CD1d. The first antigen described, α-galactosyl ceramide (αGalCer), is a potential anticancer agent whose activity depends upon IFN-γ secretion. We report two analogs of αGalCer based on a naturally occurring glycosphingolipid, plakoside A. These compounds induce enhanced IFN-γ that correlates with detergent-resistant binding to CD1d and an increased stability of the lipid-CD1d complexes on antigen-presenting cells. Structural analysis on one of the analogs indicates that it is more deeply bound inside the CD1d groove, suggesting tighter lipid-CD1d interactions. To our knowledge, this is the first example in which structural information provides an explanation for the increased lipid-CD1d stability, likely responsible for the Th1 bias. We provide insights into the mechanism of IFN-γ-inducing compounds, and because our compounds activate human NKT cells, they could have therapeutic utility.

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