3TPX image
Deposition Date 2011-09-08
Release Date 2012-06-20
Last Version Date 2023-12-06
Entry Detail
PDB ID:
3TPX
Title:
Crystal structure of human MDM2 in complex with a trifluoromethylated D-peptide inhibitor
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase Mdm2
Gene (Uniprot):MDM2
Chain IDs:A, C, E
Chain Length:85
Number of Molecules:3
Biological Source:Homo sapiens
Peptide-like Molecules
PRD_000995
Primary Citation
An Ultrahigh Affinity d-Peptide Antagonist Of MDM2.
J.Med.Chem. 55 6237 6241 (2012)
PMID: 22694121 DOI: 10.1021/jm3005465

Abstact

The oncoprotein MDM2 negatively regulates the activity and stability of the p53 tumor suppressor and is an important molecular target for anticancer therapy. Aided by mirror image phage display and native chemical ligation, we have previously discovered several proteolysis-resistant duodecimal d-peptide antagonists of MDM2, termed (D)PMI-α, β, γ. The prototypic d-peptide inhibitor (D)PMI-α binds ((25-109))MDM2 at an affinity of 220 nM and kills tumor cells in vitro and inhibits tumor growth in vivo by reactivating the p53 pathway. Herein, we report the design of a superactive d-peptide antagonist of MDM2, termed (D)PMI-δ, of which the binding affinity for ((25-109))MDM2 has been improved over (D)PMI-α by 3 orders of magnitude (K(d) = 220 pM). X-ray crystallographic studies validate (D)PMI-δ as an exceedingly potent inhibitor of the p53-MDM2 interaction, promising to be a highly attractive lead drug candidate for anticancer therapeutic development.

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Primary Citation of related structures