3TNF image
Deposition Date 2011-09-01
Release Date 2011-11-02
Last Version Date 2024-02-28
Entry Detail
PDB ID:
3TNF
Title:
LidA from Legionella in complex with active Rab8a
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.27
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 43 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ras-related protein Rab-8A
Gene (Uniprot):RAB8A
Chain IDs:A
Chain Length:174
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:LidA
Gene (Uniprot):lpg0940
Chain IDs:B
Chain Length:384
Number of Molecules:1
Biological Source:Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Primary Citation
Protein LidA from Legionella is a Rab GTPase supereffector.
Proc.Natl.Acad.Sci.USA 108 17945 17950 (2011)
PMID: 22011575 DOI: 10.1073/pnas.1113133108

Abstact

The causative agent of Legionnaires disease, Legionella pneumophila, injects several hundred proteins into the cell it infects, many of which interfere with or exploit vesicular transport processes. One of these proteins, LidA, has been described as a Rab effector (i.e., a molecule that interacts preferentially with the GTP-bound form of Rab). We describe here the structure and biochemistry of a complex between the Rab-binding domain of LidA and active Rab8a. LidA displays structural peculiarities in binding to Rab8a, forming a considerably extended interface in comparison to known mammalian Rab effectors, and involving regions of the GTPase that are not seen in other Rab:effector complexes. In keeping with this extended binding interface, which involves four α-helices and two pillar-like structures of LidA, the stability of LidA-Rab interactions is dramatically greater than for other such complexes. For Rab1b and Rab8a, these affinities are extraordinarily high, but for the more weakly bound Rab6a, K(d) values of 4 nM for the inactive and 30 pM for the active form were found. Rab1b and Rab8a appear to bind LidA with K(d) values in the low picomolar range, making LidA a Rab supereffector.

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Primary Citation of related structures