3TMP image
Entry Detail
PDB ID:
3TMP
Title:
The catalytic domain of human deubiquitinase DUBA in complex with ubiquitin aldehyde
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2011-08-31
Release Date:
2012-01-11
Method Details:
Experimental Method:
Resolution:
1.91 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:OTU domain-containing protein 5
Mutations:S172 phosphorylated
Chain IDs:A, C, E, G
Chain Length:184
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Polyubiquitin-C
Chain IDs:B, D, F, H
Chain Length:76
Number of Molecules:4
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
GLZ B GLY AMINO-ACETALDEHYDE
SEP A SER PHOSPHOSERINE
Primary Citation
Phosphorylation-dependent activity of the deubiquitinase DUBA.
Nat.Struct.Mol.Biol. 19 171 175 (2012)
PMID: 22245969 DOI: 10.1038/nsmb.2206

Abstact

Addition and removal of ubiquitin or ubiquitin chains to and from proteins is a tightly regulated process that contributes to cellular signaling and protein stability. Here we show that phosphorylation of the human deubiquitinase DUBA (OTUD5) at a single residue, Ser177, is both necessary and sufficient to activate the enzyme. The crystal structure of the ubiquitin aldehyde adduct of active DUBA reveals a marked cooperation between phosphorylation and substrate binding. An intricate web of interactions involving the phosphate and the C-terminal tail of ubiquitin cause DUBA to fold around its substrate, revealing why phosphorylation is essential for deubiquitinase activity. Phosphoactivation of DUBA represents an unprecedented mode of protease regulation and a clear link between two major cellular signal transduction systems: phosphorylation and ubiquitin modification.

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Primary Citation of related structures