3TKC image
Deposition Date 2011-08-26
Release Date 2012-03-07
Last Version Date 2023-09-13
Entry Detail
PDB ID:
3TKC
Keywords:
Title:
Design, Synthesis, Evaluation and Structure of Vitamin D Analogues with Furan Side Chains
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.75 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Vitamin D3 receptor
Gene (Uniprot):VDR
Chain IDs:A
Chain Length:259
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Design, synthesis, evaluation, and structure of vitamin D analogues with furan side chains.
Chemistry 18 603 612 (2012)
PMID: 22162241 DOI: 10.1002/chem.201102695

Abstact

Based on the crystal structures of human vitamin D receptor (hVDR) bound to 1α,25-dihydroxy-vitamin D(3) (1,25 D) and superagonist ligands, we previously designed new superagonist ligands with a tetrahydrofuran ring at the side chain that optimize the aliphatic side-chain conformation through an entropy benefit. Following a similar strategy, four novel vitamin D analogues with aromatic furan side chains (3a, 3b, 4a, 4b) have now been developed. The triene system has been constructed by an efficient stereoselective intramolecular cyclization of an enol triflate (A-ring precursor) followed by a Suzuki-Miyaura coupling of the resulting intermediate with an alkenyl boronic ester (CD-side chain, upper fragment). The furan side chains have been constructed by gold chemistry. These analogues exhibit significant pro-differentiation effects and transactivation potency. The crystal structure of 3a in a complex with the ligand-binding domain of hVDR revealed that the side-chain furanic ring adopts two conformations.

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