3TEH image
Deposition Date 2011-08-14
Release Date 2011-11-23
Last Version Date 2024-02-28
Entry Detail
PDB ID:
3TEH
Keywords:
Title:
Crystal structure of Thermus thermophilus Phenylalanyl-tRNA synthetase complexed with L-dopa
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.85 Å
R-Value Free:
0.29
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Phenylalanyl-tRNA synthetase alpha chain
Gene (Uniprot):pheS
Chain IDs:A
Chain Length:350
Number of Molecules:1
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Molecule:Phenylalanyl-tRNA synthetase beta chain
Gene (Uniprot):pheT
Chain IDs:B
Chain Length:785
Number of Molecules:1
Biological Source:Thermus thermophilus
Ligand Molecules
Primary Citation
Bacterial and Eukaryotic Phenylalanyl-tRNA Synthetases Catalyze Misaminoacylation of tRNA(Phe) with 3,4-Dihydroxy-L-Phenylalanine.
Chem.Biol. 18 1221 1229 (2011)
PMID: 22035791 DOI: 10.1016/j.chembiol.2011.08.008

Abstact

Aminoacyl-tRNA synthetases exert control over the accuracy of translation by selective pairing the correct amino acids with their cognate tRNAs, and proofreading the misacylated products. Here we show that three existing, structurally different phenylalanyl-tRNA synthetases-human mitochondrial (HsmtPheRS), human cytoplasmic (HsctPheRS), and eubacterial from Thermus thermophilus (TtPheRS), catalyze mischarging of tRNA(Phe) with an oxidized analog of tyrosine-L-dopa. The lowest level of L-dopa discrimination over the cognate amino acid, exhibited by HsmtPheRS, is comparable to that of tyrosyl-tRNA synthetase. HsmtPheRS and TtPheRS complexes with L-dopa revealed in the active sites an electron density shaping this ligand. HsctPheRS and TtPheRS possessing editing activity are capable of hydrolyzing the exogenous L-dopa-tRNA(Phe) as efficiently as Tyr-tRNA(Phe). However, editing activity of PheRS does not guarantee reduction of the aminoacylation error rate to escape misincorporation of L-dopa into polypeptide chains.

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Primary Citation of related structures