ISDA

Deposition Date 2011-08-08

Release Date 2012-08-08

Last Version Date 2024-11-06

Entry Detail

PDB ID:

3TBY

Keywords:

Immune system/agonist

Title:

CRYSTAL STRUCTURE OF THE MURINE CLASS I MAJOR HISTOCOMPATIBILITY COMPLEX H-2DB IN COMPLEX WITH THE LCMV-DERIVED GP33 ALTERED PEPTIDE ligand (V3P, Y4F)

Biological Source:

Source Organism:

Mus musculus (Taxon ID: 10090)
Lymphocytic choriomeningitis virus (Taxon ID: 11627)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.50 Å

R-Value Free:

0.31

R-Value Work:

0.28

R-Value Observed:

0.28

Space Group:

P 1 21 1

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:H-2 class I histocompatibility antigen, D-B alpha chain
Gene (Uniprot):H2-D1
Chain IDs:A, D, G, J
Chain Length:276
Number of Molecules:4
Biological Source:Mus musculus

UniProt ID:P01899 Pfam ID:PF00129, PF07654

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2m
Chain IDs:B, E, H, K
Chain Length:99
Number of Molecules:4
Biological Source:Mus musculus

UniProt ID:P01887 Pfam ID:PF07654

Protein Blast

Polymer Type:polypeptide(L)
Molecule:GLYCOPROTEIN GPC
Gene (Uniprot):GPC
Mutations:V35P,Y36F
Chain IDs:C, F, I, L
Chain Length:9
Number of Molecules:4
Biological Source:Lymphocytic choriomeningitis virus

UniProt ID:P07399

Primary Citation

Conversion of a T cell viral antagonist into an agonist through higher stabilization and conserved molecular mimicry: Implications for TCR recognition

Duru, A.D, Allerbring, E.B, Uchtenhagen, H, Mazumdar, P.A, Badia-Martinez, D, Madhurantakam, C, Sandalova, T, Nygren, P, Achour, A.Show

To be Published ? ? ? (?)

Primary Citation of related structures