3T8N image
Entry Detail
PDB ID:
3T8N
Keywords:
Title:
Crystal structure of ketosteroid isomerase Y16AD103A from Pseudomonas putida
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2011-08-01
Release Date:
2011-11-23
Method Details:
Experimental Method:
Resolution:
1.47 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Steroid Delta-isomerase
Mutations:Y16A, D103A
Chain IDs:A, B, C (auth: D), D (auth: F)
Chain Length:131
Number of Molecules:4
Biological Source:Pseudomonas putida
Primary Citation
Evaluating the catalytic contribution from the oxyanion hole in ketosteroid isomerase.
J.Am.Chem.Soc. 133 20052 20055 (2011)
PMID: 22053826 DOI: 10.1021/ja208050t

Abstact

Prior site-directed mutagenesis studies in bacterial ketosteroid isomerase (KSI) reported that substitution of both oxyanion hole hydrogen bond donors gives a 10(5)- to 10(8)-fold rate reduction, suggesting that the oxyanion hole may provide the major contribution to KSI catalysis. But these seemingly conservative mutations replaced the oxyanion hole hydrogen bond donors with hydrophobic side chains that could lead to suboptimal solvation of the incipient oxyanion in the mutants, thereby potentially exaggerating the apparent energetic benefit of the hydrogen bonds relative to water-mediated hydrogen bonds in solution. We determined the functional and structural consequences of substituting the oxyanion hole hydrogen bond donors and several residues surrounding the oxyanion hole with smaller residues in an attempt to create a local site that would provide interactions more analogous to those in aqueous solution. These more drastic mutations created an active-site cavity estimated to be ~650 Å(3) and sufficient for occupancy by 15-17 water molecules and led to a rate decrease of only ~10(3)-fold for KSI from two different species, a much smaller effect than that observed from more traditional conservative mutations. The results underscore the strong context dependence of hydrogen bond energetics and suggest that the oxyanion hole provides an important, but moderate, catalytic contribution relative to the interactions in the corresponding solution reaction.

Legend

Protein

Chemical

Disease

Primary Citation of related structures