3T70 image
Deposition Date 2011-07-29
Release Date 2012-08-29
Last Version Date 2023-11-01
Entry Detail
PDB ID:
3T70
Title:
5'-Diphenyl Nucleoside Inhibitors of Plasmodium falciparum dUTPase
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 41
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Deoxyuridine 5'-triphosphate nucleotidohydrolase, putative
Gene (Uniprot):PF3D7_1127100
Chain IDs:A, B, C
Chain Length:181
Number of Molecules:3
Biological Source:Plasmodium falciparum
Polymer Type:polypeptide(L)
Molecule:PEPTIDE GLY-HIS-GLY
Chain IDs:D (auth: F)
Chain Length:3
Number of Molecules:1
Biological Source:synthetic construct
Primary Citation
Design, synthesis, and evaluation of 5'-diphenyl nucleoside analogues as inhibitors of the Plasmodium falciparum dUTPase.
Chemmedchem 6 1816 1831 (2011)
PMID: 22049550 DOI: 10.1002/cmdc.201100255

Abstact

Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) is a potential drug target for malaria. We previously reported some 5'-tritylated deoxyuridine analogues (both cyclic and acyclic) as selective inhibitors of the Plasmodium falciparum dUTPase. Modelling studies indicated that it might be possible to replace the trityl group with a diphenyl moiety, as two of the phenyl groups are buried, whereas the third is exposed to solvent. Herein we report the synthesis and evaluation of some diphenyl analogues that have lower lipophilicity and molecular weight than the trityl lead compound. Co-crystal structures show that the diphenyl inhibitors bind in a similar manner to the corresponding trityl derivatives, with the two phenyl moieties occupying the predicted buried phenyl binding sites. The diphenyl compounds prepared show similar or slightly lower inhibition of PfdUTPase, and similar or weaker inhibition of parasite growth than the trityl compounds.

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Primary Citation of related structures