3T4R image
Deposition Date 2011-07-26
Release Date 2013-01-30
Last Version Date 2024-10-09
Entry Detail
PDB ID:
3T4R
Keywords:
Title:
Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Domain
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.29
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 41 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phosphoprotein
Gene (Uniprot):P
Chain IDs:A
Chain Length:81
Number of Molecules:1
Biological Source:Lettuce necrotic yellows virus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
Ligand Molecules
Primary Citation
Structure of the C-terminal domain of lettuce necrotic yellows virus phosphoprotein.
J.Virol. 87 9569 9578 (2013)
PMID: 23785215 DOI: 10.1128/JVI.00999-13

Abstact

Lettuce necrotic yellows virus (LNYV) is a prototype of the plant-adapted cytorhabdoviruses. Through a meta-prediction of disorder, we localized a folded C-terminal domain in the amino acid sequence of its phosphoprotein. This domain consists of an autonomous folding unit that is monomeric in solution. Its structure, solved by X-ray crystallography, reveals a lollipop-shaped structure comprising five helices. The structure is different from that of the corresponding domains of other Rhabdoviridae, Filoviridae, and Paramyxovirinae; only the overall topology of the polypeptide chain seems to be conserved, suggesting that this domain evolved under weak selective pressure and varied in size by the acquisition or loss of functional modules.

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Primary Citation of related structures