3T1G image
Entry Detail
PDB ID:
3T1G
Keywords:
Title:
Engineering of organophosphate hydrolase by computational design and directed evolution
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2011-07-21
Release Date:
2012-02-08
Method Details:
Experimental Method:
Resolution:
2.35 Å
R-Value Free:
0.24
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 2 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:organophosphate hydrolase
Mutations:D19S,L58Q,F61T,F65W,Q138H,A183I,V218F,D296A,I299E
Chain IDs:A
Chain Length:353
Number of Molecules:1
Biological Source:Mus musculus
Primary Citation
Computational redesign of a mononuclear zinc metalloenzyme for organophosphate hydrolysis.
Nat.Chem.Biol. 8 294 300 (2012)
PMID: 22306579 DOI: 10.1038/nchembio.777

Abstact

The ability to redesign enzymes to catalyze noncognate chemical transformations would have wide-ranging applications. We developed a computational method for repurposing the reactivity of metalloenzyme active site functional groups to catalyze new reactions. Using this method, we engineered a zinc-containing mouse adenosine deaminase to catalyze the hydrolysis of a model organophosphate with a catalytic efficiency (k(cat)/K(m)) of ~10(4) M(-1) s(-1) after directed evolution. In the high-resolution crystal structure of the enzyme, all but one of the designed residues adopt the designed conformation. The designed enzyme efficiently catalyzes the hydrolysis of the R(P) isomer of a coumarinyl analog of the nerve agent cyclosarin, and it shows marked substrate selectivity for coumarinyl leaving groups. Computational redesign of native enzyme active sites complements directed evolution methods and offers a general approach for exploring their untapped catalytic potential for new reactivities.

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