ISDA

Deposition Date 2011-07-14

Release Date 2011-10-26

Last Version Date 2024-11-06

Entry Detail

PDB ID:

3SX4

Keywords:

HYDROLASE/HYDROLASE inhibitor

Title:

Crystal structure of human dpp-iv in complex with sa-(+)-3-(aminomethyl)-4-(2,4-dichlorophenyl)-6-(2-methoxyphenyl)- 2-methyl-5h-pyrrolo[3,4-b]pyridin-7(6h)-one

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Pichia pastoris

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.60 Å

R-Value Free:

0.27

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

P 21 21 21

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Dipeptidyl peptidase 4
Gene (Uniprot):DPP4
Chain IDs:A, B
Chain Length:753
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P27487 Pfam ID:PF00930, PF00326 EC:3.4.14.5

Modified Residue

Compound ID	Chain ID	Parent Comp ID	Details	2D Image
ASN	B	ASN	GLYCOSYLATION SITE

Ligand Molecules

KXA

NAG

Primary Citation

7-Oxopyrrolopyridine-derived DPP4 inhibitors-mitigation of CYP and hERG liabilities via introduction of polar functionalities in the active site.

Wang, W, Devasthale, P, Wang, A, Harrity, T, Egan, D, Morgan, N, Cap, M, Fura, A, Klei, H.E, Kish, K, Weigelt, C, Sun, L, Levesque, P, Li, Y.X, Zahler, R, Kirby, M.S, Hamann, L.G.Show

Bioorg.Med.Chem.Lett. 21 6646 6651 (2011)

PMID: 21996520 DOI: 10.1016/j.bmcl.2011.09.074

Abstact

Design, synthesis, and SAR of 7-oxopyrrolopyridine-derived DPP4 inhibitors are described. The preferred stereochemistry of these atropisomeric biaryl analogs has been identified as Sa. Compound (+)-3t, with a K(i) against DPP4, DPP8, and DPP9 of 0.37 nM, 2.2, and 5.7 μM, respectively, showed a significant improvement in insulin response after single doses of 3 and 10 μmol/kg in ob/ob mice.

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Primary Citation of related structures