3SOB image
Deposition Date 2011-06-30
Release Date 2011-09-21
Last Version Date 2024-10-30
Entry Detail
PDB ID:
3SOB
Title:
The structure of the first YWTD beta propeller domain of LRP6 in complex with a FAB
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Low-density lipoprotein receptor-related protein 6
Gene (Uniprot):LRP6
Chain IDs:B
Chain Length:316
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:antibody heavy chain
Chain IDs:C (auth: H)
Chain Length:256
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:antibody light chain
Chain IDs:A (auth: L)
Chain Length:237
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Wnt antagonists bind through a short peptide to the first beta-propeller domain of LRP5/6.
Structure 19 1433 1442 (2011)
PMID: 21944579 DOI: 10.1016/j.str.2011.07.005

Abstact

The Wnt pathway inhibitors DKK1 and sclerostin (SOST) are important therapeutic targets in diseases involving bone loss or damage. It has been appreciated that Wnt coreceptors LRP5/6 are also important, as human missense mutations that result in bone overgrowth (bone mineral density, or BMD, mutations) cluster to the E1 propeller domain of LRP5. Here, we report a crystal structure of LRP6 E1 bound to an antibody, revealing that the E1 domain is a peptide recognition module. Remarkably, the consensus E1 binding sequence is a close match to a conserved tripeptide motif present in all Wnt inhibitors that bind LRP5/6. We show that this motif is important for DKK1 and SOST binding to LRP6 and for inhibitory function, providing a detailed structural explanation for the effect of the BMD mutations.

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Primary Citation of related structures