3SO2 image
Deposition Date 2011-06-29
Release Date 2012-07-04
Last Version Date 2023-09-13
Entry Detail
PDB ID:
3SO2
Keywords:
Title:
Chlorella dUTPase
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.64 Å
R-Value Free:
0.26
R-Value Work:
0.24
R-Value Observed:
0.25
Space Group:
H 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Putative uncharacterized protein
Gene (Uniprot):CHLNCDRAFT_27939
Chain IDs:A
Chain Length:146
Number of Molecules:1
Biological Source:Chlorella variabilis
Primary Citation
Crystallization of Chlorella deoxyuridine triphosphatase.
Acta Crystallogr.,Sect.F 67 1599 1602 (2011)
PMID: 22139176 DOI: 10.1107/S1744309111038097

Abstact

Deoxyuridine triphosphatase (dUTPase) is a ubiquitous enzyme that has been widely studied owing to its function and evolutionary significance. The gene coding for the dUTPase from the Chlorella alga was codon-optimized and synthesized. The synthetic gene was expressed in Escherichia coli and recombinant core Chlorella dUTPase (chdUTPase) was purified. Crystallization of chdUTPase was performed by the repetitive hanging-drop vapor-diffusion method at 298 K with ammonium sulfate as the precipitant. In the presence of 2'-deoxyuridine-5'-[(α,β)-imido]triphosphate and magnesium, the enzyme produced die-shaped hexagonal R3 crystals with unit-cell parameters a = b = 66.9, c = 93.6 Å, γ = 120°. X-ray diffraction data for chdUTPase were collected to 1.6 Å resolution. The crystallization of chdUTPase with manganese resulted in very fragile clusters of needles.

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