ISDA

Deposition Date 2011-06-24

Release Date 2011-10-26

Last Version Date 2024-02-28

Entry Detail

PDB ID:

3SL3

Keywords:

HYDROLASE

Title:

Crystal structure of the apo form of the catalytic domain of PDE4D2

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.10 Å

R-Value Free:

0.25

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

P 21 21 21

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:cAMP-specific 3',5'-cyclic phosphodiesterase 4D
Gene (Uniprot):PDE4D
Chain IDs:A, B, C, D
Chain Length:361
Number of Molecules:4
Biological Source:Homo sapiens

UniProt ID:Q08499 Pfam ID:PF00233 EC:3.1.4.53

Ligand Molecules

DMS

EDO

EPE

PEG

PO4

Primary Citation

Thiophene inhibitors of PDE4: Crystal structures show a second binding mode at the catalytic domain of PDE4D2.

Nankervis, J.L, Feil, S.C, Hancock, N.C, Zheng, Z, Ng, H.L, Morton, C.J, Holien, J.K, Ho, P.W, Frazzetto, M.M, Jennings, I.G, Manallack, D.T, Martin, T.J, Thompson, P.E, Parker, M.W.Show

Bioorg.Med.Chem.Lett. 21 7089 7093 (2011)

PMID: 22030030 DOI: 10.1016/j.bmcl.2011.09.109

Abstact

PDE4 inhibitors have been identified as therapeutic targets for a variety of conditions, particularly inflammatory diseases. We have serendipitously identified a novel class of phosphodiesterase 4 (PDE4) inhibitor during a study to discover antagonists of the parathyroid hormone receptor. X-ray crystallographic studies of PDE4D2 complexed to four potent inhibitors reveal the atomic details of how they inhibit the enzyme and a notable contrast to another recently reported thiophene-based inhibitor.

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Primary Citation of related structures