3SKU image
Deposition Date 2011-06-23
Release Date 2011-10-12
Last Version Date 2024-11-06
Entry Detail
PDB ID:
3SKU
Title:
Herpes simplex virus glycoprotein D bound to the human receptor nectin-1
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.00 Å
R-Value Free:
0.28
R-Value Work:
0.26
R-Value Observed:
0.26
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Glycoprotein D
Chain IDs:A, B, C
Chain Length:285
Number of Molecules:3
Biological Source:Human herpesvirus 1
Polymer Type:polypeptide(L)
Molecule:Poliovirus receptor-related protein 1
Gene (Uniprot):NECTIN1
Chain IDs:D (auth: E), E (auth: D), F
Chain Length:319
Number of Molecules:3
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN E ASN GLYCOSYLATION SITE
Ligand Molecules
Primary Citation
Structure of herpes simplex virus glycoprotein d bound to the human receptor nectin-1.
Plos Pathog. 7 e1002277 e1002277 (2011)
PMID: 21980294 DOI: 10.1371/journal.ppat.1002277

Abstact

Binding of herpes simplex virus (HSV) glycoprotein D (gD) to a cell surface receptor is required to trigger membrane fusion during entry into host cells. Nectin-1 is a cell adhesion molecule and the main HSV receptor in neurons and epithelial cells. We report the structure of gD bound to nectin-1 determined by x-ray crystallography to 4.0 Å resolution. The structure reveals that the nectin-1 binding site on gD differs from the binding site of the HVEM receptor. A surface on the first Ig-domain of nectin-1, which mediates homophilic interactions of Ig-like cell adhesion molecules, buries an area composed by residues from both the gD N- and C-terminal extensions. Phenylalanine 129, at the tip of the loop connecting β-strands F and G of nectin-1, protrudes into a groove on gD, which is otherwise occupied by C-terminal residues in the unliganded gD and by N-terminal residues in the gD/HVEM complex. Notably, mutation of Phe129 to alanine prevents nectin-1 binding to gD and HSV entry. Together these data are consistent with previous studies showing that gD disrupts the normal nectin-1 homophilic interactions. Furthermore, the structure of the complex supports a model in which gD-receptor binding triggers HSV entry through receptor-mediated displacement of the gD C-terminal region.

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Primary Citation of related structures