3SFD image
Deposition Date 2011-06-13
Release Date 2011-09-07
Last Version Date 2024-11-20
Entry Detail
PDB ID:
3SFD
Keywords:
Title:
crystal structure of porcine mitochondrial respiratory complex II bound with oxaloacetate and pentachlorophenol
Biological Source:
Source Organism:
Sus scrofa (Taxon ID: 9823)
Method Details:
Experimental Method:
Resolution:
2.61 Å
R-Value Free:
0.28
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial
Gene (Uniprot):SDHA
Chain IDs:A
Chain Length:622
Number of Molecules:1
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial
Gene (Uniprot):SDHB
Chain IDs:B
Chain Length:252
Number of Molecules:1
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
Gene (Uniprot):SDHC
Chain IDs:C
Chain Length:140
Number of Molecules:1
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial
Gene (Uniprot):SDHD
Chain IDs:D
Chain Length:103
Number of Molecules:1
Biological Source:Sus scrofa
Primary Citation
Thiabendazole inhibits ubiquinone reduction activity of mitochondrial respiratory complex II via a water molecule mediated binding feature.
Protein Cell 2 531 542 (2011)
PMID: 21822798 DOI: 10.1007/s13238-011-1079-1

Abstact

The mitochondrial respiratory complex II or succinate: ubiquinone oxidoreductase (SQR) is a key membrane complex in both the tricarboxylic acid cycle and aerobic respiration. Five disinfectant compounds were investigated with their potent inhibition effects on the ubiquinone reduction activity of the porcine mitochondrial SQR by enzymatic assay and crystallography. Crystal structure of the SQR bound with thiabendazole (TBZ) reveals a different inhibitor-binding feature at the ubiquinone binding site where a water molecule plays an important role. The obvious inhibitory effect of TBZ based on the biochemical data (IC(50) ~100 μmol/L) and the significant structure-based binding affinity calculation (~94 μmol/L) draw the suspicion of using TBZ as a good disinfectant compound for nematode infections treatment and fruit storage.

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