ISDA: 3S88

Deposition Date 2011-05-27

Release Date 2011-12-07

Last Version Date 2024-11-06

Entry Detail

PDB ID:

3S88

Keywords:

IMMUNE SYSTEM/VIRAL PROTEIN

Title:

Crystal structure of Sudan Ebolavirus Glycoprotein (strain Gulu) bound to 16F6

Biological Source:

Source Organism:

Mus musculus (Taxon ID: 10090)
Sudan ebolavirus (Taxon ID: 186540)

Host Organism:

Mus musculus

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

3.35 Å

R-Value Free:

0.27

R-Value Work:

0.22

R-Value Observed:

0.22

Space Group:

I 2 3

Download Validation Report

Macromolecular Entities

Polymer Type:polypeptide(L)
Molecule:16F6 - Heavy chain
Chain IDs:A (auth: H)
Chain Length:220
Number of Molecules:1
Biological Source:Mus musculus

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein
Gene (Uniprot):GP
Mutagens:I631V, Q638V
Chain IDs:B (auth: I)
Chain Length:298
Number of Molecules:1
Biological Source:Sudan ebolavirus

UniProt ID:Q7T9D9 Pfam ID:PF01611, PF22307

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein
Gene (Uniprot):GP
Chain IDs:C (auth: J)
Chain Length:167
Number of Molecules:1
Biological Source:Sudan ebolavirus

UniProt ID:Q7T9D9 Pfam ID:PF01611, PF22307

Polymer Type:polypeptide(L)
Molecule:16F6 - Light chain
Chain IDs:D (auth: L)
Chain Length:212
Number of Molecules:1
Biological Source:Mus musculus

Modified Residue

Compound ID	Chain ID	Parent Comp ID	Details	2D Image
ASN	B	ASN	GLYCOSYLATION SITE

Ligand Molecules

Primary Citation

A shared structural solution for neutralizing ebolaviruses.

Dias, J.M, Kuehne, A.I, Abelson, D.M, Bale, S, Wong, A.C, Halfmann, P, Muhammad, M.A, Fusco, M.L, Zak, S.E, Kang, E, Kawaoka, Y, Chandran, K, Dye, J.M, Saphire, E.O.Show

Nat.Struct.Mol.Biol. 18 1424 1427 (2011)

PMID: 22101933 DOI: 10.1038/nsmb.2150

Abstact

Sudan virus (genus Ebolavirus) is lethal, yet no monoclonal antibody is known to neutralize it. We here describe antibody 16F6 that neutralizes Sudan virus and present its structure bound to the trimeric viral glycoprotein. Unexpectedly, the 16F6 epitope overlaps that of KZ52, the only other antibody against the GP(1,2) core to be visualized to date. Furthermore, both antibodies against this crucial epitope bridging GP1-GP2 neutralize at a post-internalization step--probably fusion.

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Disease

Primary Citation of related structures