3S6Y image
Deposition Date 2011-05-26
Release Date 2011-11-23
Last Version Date 2024-02-28
Entry Detail
PDB ID:
3S6Y
Keywords:
Title:
Structure of reovirus attachment protein sigma1 in complex with alpha-2,6-sialyllactose
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.79 Å
R-Value Free:
0.20
R-Value Work:
0.15
R-Value Observed:
0.16
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Outer capsid protein sigma-1
Gene (Uniprot):S1
Mutations:T249I
Chain IDs:A, B, C
Chain Length:325
Number of Molecules:3
Biological Source:Reovirus type 3
Ligand Molecules
Peptide-like Molecules
PRD_900066
Primary Citation
Crystal structure of reovirus attachment protein sigma1 in complex with sialylated oligosaccharides
Plos Pathog. 7 e1002166 e1002166 (2011)
PMID: 21829363 DOI: 10.1371/journal.ppat.1002166

Abstact

Many viruses attach to target cells by binding to cell-surface glycans. To gain a better understanding of strategies used by viruses to engage carbohydrate receptors, we determined the crystal structures of reovirus attachment protein σ1 in complex with α-2,3-sialyllactose, α-2,6-sialyllactose, and α-2,8-di-siallylactose. All three oligosaccharides terminate in sialic acid, which serves as a receptor for the reovirus serotype studied here. The overall structure of σ1 resembles an elongated, filamentous trimer. It contains a globular head featuring a compact β-barrel, and a fibrous extension formed by seven repeating units of a triple β-spiral that is interrupted near its midpoint by a short α-helical coiled coil. The carbohydrate-binding site is located between β-spiral repeats two and three, distal from the head. In all three complexes, the terminal sialic acid forms almost all of the contacts with σ1 in an identical manner, while the remaining components of the oligosaccharides make little or no contacts. We used this structural information to guide mutagenesis studies to identify residues in σ1 that functionally engage sialic acid by assessing hemagglutination capacity and growth in murine erythroleukemia cells, which require sialic acid binding for productive infection. Our studies using σ1 mutant viruses reveal that residues 198, 202, 203, 204, and 205 are required for functional binding to sialic acid by reovirus. These findings provide insight into mechanisms of reovirus attachment to cell-surface glycans and contribute to an understanding of carbohydrate binding by viruses. They also establish a filamentous, trimeric carbohydrate-binding module that could potentially be used to endow other trimeric proteins with carbohydrate-binding properties.

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Primary Citation of related structures