3S5V image
Entry Detail
PDB ID:
3S5V
Keywords:
Title:
Structure of the cyanobacterial Oscillatoria Agardhii Agglutinin (OAA) in free state obtained at -180 degrees Celsius
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2011-05-23
Release Date:
2011-06-15
Method Details:
Experimental Method:
Resolution:
1.55 Å
R-Value Free:
0.19
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Lectin
Chain IDs:A
Chain Length:133
Number of Molecules:1
Biological Source:Planktothrix agardhii
Ligand Molecules
Primary Citation
Structural basis of the anti-HIV activity of the cyanobacterial Oscillatoria Agardhii agglutinin.
Structure 19 1170 1181 (2011)
PMID: 21827952 DOI: 10.1016/j.str.2011.05.010

Abstact

The cyanobacterial Oscillatory Agardhii agglutinin (OAA) is a recently discovered HIV-inactivating lectin that interacts with high-mannose sugars. Nuclear magnetic resonance (NMR) binding studies between OAA and α3,α6-mannopentaose (Manα(1-3)[Manα(1-3)[Manα(1-6)]Manα(1-6)]Man), the branched core unit of Man-9, revealed two binding sites at opposite ends of the protein, exhibiting essentially identical affinities. Atomic details of the specific protein-sugar contacts in the recognition loops of OAA were delineated in the high-resolution crystal structures of free and glycan-complexed protein. No major changes in the overall protein structure are induced by carbohydrate binding, with essentially identical apo- and sugar-bound conformations in binding site 1. A single peptide bond flip at W77-G78 is seen in binding site 2. Our combined NMR and crystallographic results provide structural insights into the mechanism by which OAA specifically recognizes the branched Man-9 core, distinctly different from the recognition of the D1 and D3 arms at the nonreducing end of high-mannose carbohydrates by other antiviral lectins.

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