3RYL image
Deposition Date 2011-05-11
Release Date 2011-08-31
Last Version Date 2024-10-30
Entry Detail
PDB ID:
3RYL
Keywords:
Title:
Dimerization domain of Vibrio parahemolyticus VopL
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.29
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:protein VPA1370
Gene (Uniprot):VPA1370
Chain IDs:A, B
Chain Length:241
Number of Molecules:2
Biological Source:Vibrio parahaemolyticus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
Ligand Molecules
Primary Citation
Mechanism of actin filament nucleation by Vibrio VopL and implications for tandem W domain nucleation.
Nat.Struct.Mol.Biol. 18 1060 1067 (2011)
PMID: 21873985 DOI: 10.1038/nsmb.2109

Abstact

Pathogen proteins targeting the actin cytoskeleton often serve as model systems to understand their more complex eukaryotic analogs. We show that the strong actin filament nucleation activity of Vibrio parahaemolyticus VopL depends on its three W domains and on its dimerization through a unique VopL C-terminal domain (VCD). The VCD shows a previously unknown all-helical fold and interacts with the pointed end of the actin nucleus, contributing to the nucleation activity directly and through duplication of the W domain repeat. VopL promotes rapid cycles of filament nucleation and detachment but generally has no effect on elongation. Profilin inhibits VopL-induced nucleation by competing for actin binding to the W domains. Combined, the results suggest that VopL stabilizes a hexameric double-stranded pointed end nucleus. Analysis of hybrid constructs of VopL and the eukaryotic nucleator Spire suggest that Spire may also function as a dimer in cells.

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Primary Citation of related structures