3RVD image
Deposition Date 2011-05-06
Release Date 2012-04-25
Last Version Date 2024-11-20
Entry Detail
PDB ID:
3RVD
Title:
Crystal structure of the binary complex, obtained by soaking, of photosyntetic a4 glyceraldehyde 3-phosphate dehydrogenase (gapdh) with cp12-2, both from arabidopsis thaliana.
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.31
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
I 2 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic
Gene (Uniprot):GAPA1
Chain IDs:A, B, C, D, E, F, G, H, O, P (auth: Q)
Chain Length:337
Number of Molecules:10
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosyntetic glyceraldehyde-3-phosphate dehydrogenase (a4 isoform)
Gene (Uniprot):CP12-2
Chain IDs:I, J, K, L, M, N
Chain Length:82
Number of Molecules:6
Biological Source:Arabidopsis thaliana
Primary Citation
Conformational Selection and Folding-upon-binding of Intrinsically Disordered Protein CP12 Regulate Photosynthetic Enzymes Assembly.
J.Biol.Chem. 287 21372 21383 (2012)
PMID: 22514274 DOI: 10.1074/jbc.M112.350355

Abstact

Carbon assimilation in plants is regulated by the reduction of specific protein disulfides by light and their re-oxidation in the dark. The redox switch CP12 is an intrinsically disordered protein that can form two disulfide bridges. In the dark oxidized CP12 forms an inactive supramolecular complex with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and phosphoribulokinase, two enzymes of the carbon assimilation cycle. Here we show that binding of CP12 to GAPDH, the first step of ternary complex formation, follows an integrated mechanism that combines conformational selection with induced folding steps. Initially, a CP12 conformation characterized by a circular structural motif including the C-terminal disulfide is selected by GAPDH. Subsequently, the induced folding of the flexible C-terminal tail of CP12 in the active site of GAPDH stabilizes the binary complex. Formation of several hydrogen bonds compensates the entropic cost of CP12 fixation and terminates the interaction mechanism that contributes to carbon assimilation control.

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