3RUG image
Entry Detail
PDB ID:
3RUG
Keywords:
Title:
Crystal structure of Valpha10-Vbeta8.1 NKT TCR in complex with CD1d-alphaglucosylceramide (C20:2)
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2011-05-05
Release Date:
2011-08-03
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Antigen-presenting glycoprotein CD1d1
Chain IDs:A, C
Chain Length:302
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Beta-2-microglobulin
Chain IDs:B, D
Chain Length:99
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Valpha10(mouse variable domain, human constant domain)
Chain IDs:E, G
Chain Length:204
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Vbeta8.1(mouse variable domain, human constant domain)
Chain IDs:F, H
Chain Length:241
Number of Molecules:2
Biological Source:Mus musculus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Primary Citation
A semi-invariant V(alpha)10(+) T cell antigen receptor defines a population of natural killer T cells with distinct glycolipid antigen-recognition properties
Nat.Immunol. 12 616 623 (2011)
PMID: 21666690 DOI: 10.1038/ni.2051

Abstact

Type I natural killer T cells (NKT cells) are characterized by an invariant variable region 14-joining region 18 (V(α)14-J(α)18) T cell antigen receptor (TCR) α-chain and recognition of the glycolipid α-galactosylceramide (α-GalCer) restricted to the antigen-presenting molecule CD1d. Here we describe a population of α-GalCer-reactive NKT cells that expressed a canonical V(α)10-J(α)50 TCR α-chain, which showed a preference for α-glucosylceramide (α-GlcCer) and bacterial α-glucuronic acid-containing glycolipid antigens. Structurally, despite very limited TCRα sequence identity, the V(α)10 TCR-CD1d-α-GlcCer complex had a docking mode similar to that of type I TCR-CD1d-α-GalCer complexes, although differences at the antigen-binding interface accounted for the altered antigen specificity. Our findings provide new insight into the structural basis and evolution of glycolipid antigen recognition and have notable implications for the scope and immunological role of glycolipid-specific T cell responses.

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