3RQ7 image
Entry Detail
PDB ID:
3RQ7
Title:
Polo-like kinase 1 Polo box domain in complex with a C6H5(CH2)8-derivatized peptide inhibitor
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2011-04-27
Release Date:
2011-07-20
Method Details:
Experimental Method:
Resolution:
1.55 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Serine/threonine-protein kinase PLK1
Chain IDs:A
Chain Length:237
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
56A B HIS 3-(8-PHENYLOCTYL)-L-HISTIDINE
TPO B THR PHOSPHOTHREONINE
Peptide-like Molecules
PRD_000794
Primary Citation
Serendipitous alkylation of a Plk1 ligand uncovers a new binding channel.
Nat.Chem.Biol. 7 595 601 (2011)
PMID: 21765407 DOI: 10.1038/nchembio.614

Abstact

We obtained unanticipated synthetic byproducts from alkylation of the δ(1) nitrogen (N3) of the histidine imidazole ring of the polo-like kinase-1 (Plk1) polo-box domain (PBD)-binding peptide PLHSpT. For the highest-affinity byproduct, bearing a C(6)H(5)(CH(2))(8)- group, a Plk1 PBD cocrystal structure revealed a new binding channel that had previously been occluded. An N-terminal PEGylated version of this peptide containing a hydrolytically stable phosphothreonyl residue (pT) bound the Plk1 PBD with affinity equal to that of the non-PEGylated parent but showed markedly less interaction with the PBDs of the two closely related proteins Plk2 and Plk3. Treatment of cultured cells with this PEGylated peptide resulted in delocalization of Plk1 from centrosomes and kinetochores and in chromosome misalignment that effectively induced mitotic block and apoptotic cell death. This work provides insights that might advance efforts to develop Plk1 PBD-binding inhibitors as potential Plk1-specific anticancer agents.

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Primary Citation of related structures