3RPI image
Deposition Date 2011-04-26
Release Date 2011-07-20
Last Version Date 2024-11-27
Entry Detail
PDB ID:
3RPI
Keywords:
Title:
Crystal Structure of Fab from 3BNC60, Highly Potent anti-HIV Antibody
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.65 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Heavy chain from highly potent anti-HIV neutralizing antibody
Chain IDs:B (auth: H), C (auth: A)
Chain Length:229
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Light chain from highly potent anti-HIV neutralizing antibody
Chain IDs:A (auth: L), D (auth: B)
Chain Length:206
Number of Molecules:2
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Ligand Molecules
Primary Citation
Sequence and structural convergence of broad and potent HIV antibodies that mimic CD4 binding.
Science 333 1633 1637 (2011)
PMID: 21764753 DOI: 10.1126/science.1207227

Abstact

Passive transfer of broadly neutralizing HIV antibodies can prevent infection, which suggests that vaccines that elicit such antibodies would be protective. Thus far, however, few broadly neutralizing HIV antibodies that occur naturally have been characterized. To determine whether these antibodies are part of a larger group of related molecules, we cloned 576 new HIV antibodies from four unrelated individuals. All four individuals produced expanded clones of potent broadly neutralizing CD4-binding-site antibodies that mimic binding to CD4. Despite extensive hypermutation, the new antibodies shared a consensus sequence of 68 immunoglobulin H (IgH) chain amino acids and arise independently from two related IgH genes. Comparison of the crystal structure of one of the antibodies to the broadly neutralizing antibody VRC01 revealed conservation of the contacts to the HIV spike.

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Primary Citation of related structures