3RO8 image
Deposition Date 2011-04-25
Release Date 2012-05-16
Last Version Date 2024-02-28
Entry Detail
PDB ID:
3RO8
Keywords:
Title:
Crystal structure of the catalytic domain of XynA1 from Paenibacillus sp. JDR-2
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.34 Å
R-Value Free:
0.18
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Endo-1,4-beta-xylanase
Gene (Uniprot):xynA1
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:341
Number of Molecules:8
Biological Source:Paenibacillus sp.
Primary Citation
Novel structural features of xylanase A1 from Paenibacillus sp. JDR-2.
J.Struct.Biol. 180 303 311 (2012)
PMID: 23000703 DOI: 10.1016/j.jsb.2012.09.007

Abstact

The Gram-positive bacterium Paenibacillus sp. JDR-2 (PbJDR2) has been shown to have novel properties in the utilization of the abundant but chemically complex hemicellulosic sugar glucuronoxylan. Xylanase A1 of PbJDR2 (PbXynA1) has been implicated in an efficient process in which extracellular depolymerization of this polysaccharide is coupled to assimilation and intracellular metabolism. PbXynA1is a 154kDa cell wall anchored multimodular glycosyl hydrolase family 10 (GH10) xylanase. In this work, the 38kDa catalytic module of PbXynA1 has been structurally characterized revealing several new features not previously observed in structures of GH10 xylanases. These features are thought to facilitate hydrolysis of highly substituted, chemically complex xylans that may be the form found in close proximity to the cell wall of PbJDR2, an organism shown to have a preference for growth on polymeric glucuronoxylan.

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