3RO0 image
Deposition Date 2011-04-25
Release Date 2011-10-05
Last Version Date 2023-11-01
Entry Detail
PDB ID:
3RO0
Title:
Crystal structure of Bacillus amyloliquefaciens pyroglutamyl peptidase I and terpyridine platinum(II)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Pyrrolidone-carboxylate peptidase
Gene (Uniprot):pcp
Mutations:M58I, A202V
Chain IDs:A, B, C, D
Chain Length:223
Number of Molecules:4
Biological Source:Bacillus amyloliquefaciens
Ligand Molecules
Primary Citation
Terpyridine platinum(II) complexes inhibit cysteine proteases by binding to active-site cysteine.
J.Biomol.Struct.Dyn. 29 267 282 (2011)
PMID: 21875148 DOI: 10.1080/073911011010524993

Abstact

Platinum(II) complexes have been demonstrated to form covalent bonds with sulfur-donating ligands (in glutathione, metallothionein and other sulfur-containing biomolecules) or coordination bonds with nitrogen-donating ligands (such as histidine and guanine). To investigate how these compounds interact with cysteine proteases, we chose terpyridine platinum(II) (TP-Pt(II)) complexes as a model system. By using X-ray crystallography, we demonstrated that TP-Pt(II) formed a covalent bond with the catalytic cysteine residue in pyroglutamyl peptidase I. Moreover, by using MALDI (matrix-assisted laser desorption/ionization) and TOF-TOF (time of flight) mass spectrometry, we elucidated that the TP-Pt(II) complex formed a covalent bond with the active-site cysteine residue in two other types of cysteine protease. Taken together, the results unequivocally showed that TP-Pt(II) complexes can selectively bind to the active site of most cysteine proteases. Our findings here can be useful in the design of new anti-cancer, anti-parasite or anti-virus platinum(II) compounds.

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