3RLG image
Entry Detail
PDB ID:
3RLG
Keywords:
Title:
Crystal structure of Loxosceles intermedia phospholipase D isoform 1 H12A mutant
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2011-04-19
Release Date:
2011-08-24
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Sphingomyelin phosphodiesterase D LiSicTox-alphaIA1a
Mutations:H12A
Chain IDs:A
Chain Length:302
Number of Molecules:1
Biological Source:Loxosceles intermedia
Primary Citation
Crystallization and preliminary X-ray diffraction analysis of a class II phospholipase D from Loxosceles intermedia venom.
Acta Crystallogr.,Sect.F 67 234 236 (2011)
PMID: 21301094 DOI: 10.1107/S1744309110050931

Abstact

Phospholipases D are the major dermonecrotic component of Loxosceles venom and catalyze the hydrolysis of phospholipids, resulting in the formation of lipid mediators such as ceramide-1-phosphate and lysophosphatidic acid which can induce pathological and biological responses. Phospholipases D can be classified into two classes depending on their catalytic efficiency and the presence of an additional disulfide bridge. In this work, both wild-type and H12A-mutant forms of the class II phospholipase D from L. intermedia venom were crystallized. Wild-type and H12A-mutant crystals were grown under very similar conditions using PEG 200 as a precipitant and belonged to space group P12(1)1, with unit-cell parameters a = 50.1, b = 49.5, c = 56.5 Å, β = 105.9°. Wild-type and H12A-mutant crystals diffracted to maximum resolutions of 1.95 and 1.60 Å, respectively.

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