3RI4 image
Deposition Date 2011-04-12
Release Date 2012-04-04
Last Version Date 2023-09-13
Entry Detail
PDB ID:
3RI4
Title:
Ets1 cooperative binding to widely separated sites on promoter DNA
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
(Taxon ID: )
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Isoform Ets-1 p27 of Protein C-ets-1
Gene (Uniprot):ETS1
Chain IDs:A, D
Chain Length:163
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:TCR alpha promoter DNA
Chain IDs:B, E
Chain Length:16
Number of Molecules:2
Biological Source:
Polymer Type:polydeoxyribonucleotide
Molecule:TCR alpha promoter DNA
Chain IDs:C, F
Chain Length:16
Number of Molecules:2
Biological Source:
Primary Citation
Structural basis of ets1 cooperative binding to widely separated sites on promoter DNA.
Plos One 7 e33698 e33698 (2012)
PMID: 22432043 DOI: 10.1371/journal.pone.0033698

Abstact

Ets1 is a member of the Ets family of transcription factors. Ets1 is expressed in autoinhibited form and its DNA binding depends on partner proteins bound to adjacent sequences or the relative positioning of a second Ets-binding site (EBS). The autoinhibition of Ets1 is mediated by structural coupling of regions flanking the DNA-binding domain. The NMR structure of Ets1 revealed that the inhibitory regions comprised of helices HI1 and HI2 and H4 are packed together on the Ets domain to form an inhibitory module. The crystal structure of Ets1 unexpectedly revealed a homodimer in which homodimerisation occurs via swapping of HI1 helices. Modeling of DNA binding indicates that the Ets1 dimer can bind to two antiparallel pieces of DNA. To verify this, we crystallized and solved the structure of the complex comprised of Ets1 dimer and two pieces of DNA. DNA binding by Ets1 dimer resulted in formation of additional intermolecular protein•DNA interactions, implying that the complex formation is cooperative.

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Primary Citation of related structures