3RDC image
Entry Detail
PDB ID:
3RDC
Title:
Human Cyclophilin D Complexed with an Inhibitor
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2011-04-01
Release Date:
2012-03-21
Method Details:
Experimental Method:
Resolution:
1.94 Å
R-Value Free:
0.27
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Peptidyl-prolyl cis-trans isomerase F, mitochondrial
Mutations:K175I
Chain IDs:A
Chain Length:166
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Combining 'dry' co-crystallization and in situ diffraction to facilitate ligand screening by X-ray crystallography.
Acta Crystallogr.,Sect.D 71 1777 1787 (2015)
PMID: 26249358 DOI: 10.1107/S1399004715010342

Abstact

X-ray crystallography is an established technique for ligand screening in fragment-based drug-design projects, but the required manual handling steps - soaking crystals with ligand and the subsequent harvesting - are tedious and limit the throughput of the process. Here, an alternative approach is reported: crystallization plates are pre-coated with potential binders prior to protein crystallization and X-ray diffraction is performed directly 'in situ' (or in-plate). Its performance is demonstrated on distinct and relevant therapeutic targets currently being studied for ligand screening by X-ray crystallography using either a bending-magnet beamline or a rotating-anode generator. The possibility of using DMSO stock solutions of the ligands to be coated opens up a route to screening most chemical libraries.

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Primary Citation of related structures