3QSF image
Deposition Date 2011-02-21
Release Date 2011-12-07
Last Version Date 2023-09-13
Entry Detail
PDB ID:
3QSF
Keywords:
Title:
The first crystal structure of a human telomeric G-quadruplex DNA bound to a metal-containing ligand (a nickel complex)
Biological Source:
Source Organism:
(Taxon ID: )
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.32
R-Value Work:
0.23
R-Value Observed:
0.24
Space Group:
C 2 2 2
Macromolecular Entities
Polymer Type:polydeoxyribonucleotide
Molecule:5'-D(*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*T)-3'
Chain IDs:A (auth: X)
Chain Length:12
Number of Molecules:1
Biological Source:
Primary Citation
Molecular basis of structure-activity relationships between salphen metal complexes and human telomeric DNA quadruplexes.
J.Med.Chem. 55 209 222 (2012)
PMID: 22112241 DOI: 10.1021/jm201140v

Abstact

The first X-ray crystal structures of nickel(II) and copper(II) salphen metal complexes bound to a quadruplex DNA are presented. Two structures have been determined and show that these salphen-metal complexes bind to human telomeric quadruplexes by end-stacking, with the metal in each case almost in line with the potassium ion channel. Quadruplex and duplex DNA binding is presented for these two and other related salphen complexes, all with side-chains terminating in pyrrolidino end-groups and differing patterns of substitution on the salphen core. The crystal structures are able to provide rationalizations for the structure-activity data, and in particular for the superior quadruplex-binding of the nickel complexes compared to that of the copper-containing ones. The complexes show significant antiproliferative activity for the compounds in a panel of cancer cell lines. They also show telomerase inhibitory activity in the telomerase TRAP-LIG assay.

Legend

Protein

Chemical

Disease

Primary Citation of related structures