3QL1 image
Deposition Date 2011-02-02
Release Date 2012-02-29
Last Version Date 2024-11-20
Entry Detail
PDB ID:
3QL1
Keywords:
Title:
Crystal Structure of Ribonuclease A Variant A4C/D83E/V118C
Biological Source:
Source Organism:
Bos taurus (Taxon ID: 9913)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.29 Å
R-Value Free:
0.19
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ribonuclease pancreatic
Gene (Uniprot):RNASE1
Mutations:A4C, D83E, V118C
Chain IDs:A
Chain Length:124
Number of Molecules:1
Biological Source:Bos taurus
Primary Citation
Significant stabilization of ribonuclease A by additive effects
Febs J. 279 2508 2519 (2012)
PMID: 22594773 DOI: 10.1111/j.1742-4658.2012.08632.x

Abstact

Among the strategies that employ genetic engineering to stabilize proteins, the introduction of disulfide bonds has proven to be a very potential approach. As, however, the replacement of amino acid residues by cysteines and the subsequent formation of the covalent bond can result in a severe deformation of the parental protein structure, the stabilization effect is strongly context dependent. Alternatively, the introduction of charged amino acid residues at the surface, which may result in the formation of extra ionic interactions or hydrogen bonds, provide propitious means for protein stabilization. The generation of an extra disulfide bond between residues 4 and 118 in ribonuclease A had resulted in a stabilization by 6 °C or 7 kJ mol(-1), which was mainly caused by a deceleration of the unfolding reaction [Pecher, P. & Arnold, U. (2009) Biophys Chem, 141, 21-28]. Here, Asp83 was replaced by Glu resulting in a comparable stabilization. Moreover, combination of both mutations led to an additive effect and the resulting ribonuclease A variant (T(m) ~ 76 °C, ΔG° ~ 53 kJ mol(-1)) is the most stable ribonuclease A variant described so far. The analysis of the crystal structure of A4C/D83E/V118C-ribonuclease A reveals the formation of a salt bridge between the γ-carboxyl group of Glu83 and the ε-amino group of Lys104.

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