3QIM image
Deposition Date 2011-01-27
Release Date 2011-03-02
Last Version Date 2023-11-01
Entry Detail
PDB ID:
3QIM
Title:
Histidine 416 of the periplamsic binding protein NikA is essential for nickel uptake in Escherichia coli
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.23
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nickel-binding periplasmic protein
Gene (Uniprot):nikA
Mutagens:H416I
Chain IDs:A, B
Chain Length:502
Number of Molecules:2
Biological Source:Escherichia coli
Primary Citation
Histidine 416 of the periplasmic binding protein NikA is essential for nickel uptake in Escherichia coli
Febs Lett. 585 711 715 (2011)
PMID: 21281641 DOI: 10.1016/j.febslet.2011.01.038

Abstact

Escherichia coli require nickel for the synthesis of [NiFe] hydrogenases under anaerobic growth conditions. Nickel import depends on the specific ABC-transporter NikABCDE encoded by the nik operon, which deletion causes the complete abolition of hydrogenase activity. We have previously postulated that the periplasmic binding protein NikA binds a natural metallophore containing three carboxylate functions that coordinate a Ni(II) ion, the fourth ligand being His416, the only direct metal-protein contact, completing a square-planar coordination for the metal. The crystal structure of the H416I mutant showed no electron density corresponding to a metal-chelator complex. In vivo experiments indicate that the mutation causes a significant decrease in nickel uptake and hydrogenase activity. These results confirm the essential role of His416 in nickel transport by NikA.

Legend

Protein

Chemical

Disease

Primary Citation of related structures