3QGK image
Deposition Date 2011-01-24
Release Date 2011-08-10
Last Version Date 2023-12-06
Entry Detail
PDB ID:
3QGK
Keywords:
Title:
3.0 A Model of Iron Containing Urease UreA2B2 from Helicobacter mustelae (refined w/ no ordered solvent)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Fusion of urease beta and gamma subunits
Gene (Uniprot):ureA2
Chain IDs:A, C (auth: D), E (auth: G), G (auth: J), I (auth: M), K (auth: P)
Chain Length:225
Number of Molecules:6
Biological Source:Helicobacter mustelae
Polymer Type:polypeptide(L)
Molecule:Urease subunit beta 2
Gene (Uniprot):ureB
Chain IDs:B (auth: C), D (auth: F), F (auth: I), H (auth: L), J (auth: O), L (auth: R)
Chain Length:568
Number of Molecules:6
Biological Source:Helicobacter mustelae
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
FME A MET N-FORMYLMETHIONINE
KCX B LYS LYSINE NZ-CARBOXYLIC ACID
Ligand Molecules
Primary Citation
Iron-containing urease in a pathogenic bacterium.
Proc.Natl.Acad.Sci.USA 108 13095 13099 (2011)
PMID: 21788478 DOI: 10.1073/pnas.1106915108

Abstact

Helicobacter mustelae, a gastric pathogen of ferrets, synthesizes a distinct iron-dependent urease in addition to its archetypical nickel-containing enzyme. The iron-urease is oxygen-labile, with the inactive protein exhibiting a methemerythrin-like electronic spectrum. Significantly, incubation of the oxidized protein with dithionite under anaerobic conditions leads to restoration of activity and bleaching of the spectrum. Structural analysis of the oxidized species reveals a dinuclear iron metallocenter bridged by a lysine carbamate, closely resembling the traditional nickel-urease active site. Although the iron-urease is less active than the nickel-enzyme, its activity allows H. mustelae to survive the carnivore's low-nickel gastric environment.

Legend

Protein

Chemical

Disease

Primary Citation of related structures