3QE3 image
Deposition Date 2011-01-19
Release Date 2011-04-27
Last Version Date 2023-09-13
Entry Detail
PDB ID:
3QE3
Keywords:
Title:
Sheep liver sorbitol dehydrogenase
Biological Source:
Source Organism:
Ovis aries (Taxon ID: 9940)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
I 2 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Sorbitol dehydrogenase
Gene (Uniprot):SORD
Chain IDs:A
Chain Length:355
Number of Molecules:1
Biological Source:Ovis aries
Primary Citation
X-ray crystal structure and small-angle X-ray scattering of sheep liver sorbitol dehydrogenase.
Acta Crystallogr.,Sect.D 67 440 446 (2011)
PMID: 21543846 DOI: 10.1107/S0907444911007815

Abstact

The X-ray crystal structure of sheep liver sorbitol dehydrogenase (slSDH) has been determined using the crystal structure of human sorbitol dehydrogenase (hSDH) as a molecular-replacement model. slSDH crystallized in space group I222 with one monomer in the asymmetric unit. A conserved tetramer that superposes well with that seen in hSDH (despite belonging to a different space group) and obeying the 222 crystal symmetry is seen in slSDH. An acetate molecule is bound in the active site, coordinating to the active-site zinc through a water molecule. Glycerol, a substrate of slSDH, also occupies the substrate-binding pocket together with the acetate designed by nature to fit large polyol substrates. The substrate-binding pocket is seen to be in close proximity to the tetramer interface, which explains the need for the structural integrity of the tetramer for enzyme activity. Small-angle X-ray scattering was also used to identify the quaternary structure of the tetramer of slSDH in solution.

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