3QDC image
Deposition Date 2011-01-18
Release Date 2011-09-14
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3QDC
Title:
Crystal structure of Natronomonas pharaonis sensory rhodopsin II in the active state
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.27
R-Value Work:
0.24
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Sensory rhodopsin-2
Gene (Uniprot):sop2
Chain IDs:A
Chain Length:239
Number of Molecules:1
Biological Source:Natronomonas pharaonis
Primary Citation
Active State of Sensory Rhodopsin II: Structural Determinants for Signal Transfer and Proton Pumping.
J.Mol.Biol. 412 591 600 (2011)
PMID: 21840321 DOI: 10.1016/j.jmb.2011.07.022

Abstact

The molecular mechanism of transmembrane signal transduction is still a pertinent question in cellular biology. Generally, a receptor can transfer an external signal via its cytoplasmic surface, as found for G-protein-coupled receptors such as rhodopsin, or via the membrane domain, such as that in sensory rhodopsin II (SRII) in complex with its transducer, HtrII. In the absence of HtrII, SRII functions as a proton pump. Here, we report on the crystal structure of the active state of uncomplexed SRII from Natronomonas pharaonis, NpSRII. The problem with a dramatic loss of diffraction quality upon loading of the active state was overcome by growing better crystals and by reducing the occupancy of the state. The conformational changes in the region comprising helices F and G are similar to those observed for the NpSRII-transducer complex but are much more pronounced. The meaning of these differences for the understanding of proton pumping and signal transduction by NpSRII is discussed.

Legend

Protein

Chemical

Disease

Primary Citation of related structures