3QD2 image
Deposition Date 2011-01-17
Release Date 2011-04-27
Last Version Date 2024-11-20
Entry Detail
PDB ID:
3QD2
Keywords:
Title:
Crystal structure of mouse PERK kinase domain
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.81 Å
R-Value Free:
0.33
R-Value Work:
0.26
R-Value Observed:
0.27
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Eukaryotic translation initiation factor 2-alpha kinase 3
Gene (Uniprot):Eif2ak3
Chain IDs:A (auth: B)
Chain Length:332
Number of Molecules:1
Biological Source:Mus musculus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
TPO A THR PHOSPHOTHREONINE
Primary Citation
The structure of the PERK kinase domain suggests the mechanism for its activation.
Acta Crystallogr.,Sect.D 67 423 428 (2011)
PMID: 21543844 DOI: 10.1107/S0907444911006445

Abstact

The endoplasmic reticulum (ER) unfolded protein response (UPR) is comprised of several intracellular signaling pathways that alleviate ER stress. The ER-localized transmembrane kinase PERK is one of three major ER stress transducers. Oligomerization of PERK's N-terminal ER luminal domain by ER stress promotes PERK trans-autophosphorylation of the C-terminal cytoplasmic kinase domain at multiple residues including Thr980 on the kinase activation loop. Activated PERK phosphorylates Ser51 of the α-subunit of translation initiation factor 2 (eIF2α), which inhibits initiation of protein synthesis and reduces the load of unfolded proteins entering the ER. The crystal structure of PERK's kinase domain has been determined to 2.8 Å resolution. The structure resembles the back-to-back dimer observed in the related eIF2α kinase PKR. Phosphorylation of Thr980 stabilizes both the activation loop and helix αG in the C-terminal lobe, preparing the latter for eIF2α binding. The structure suggests conservation in the mode of activation of eIF2α kinases and is consistent with a `line-up' model for PERK activation triggered by oligomerization of its luminal domain.

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Primary Citation of related structures