ISDA

Deposition Date 2011-01-13

Release Date 2011-03-23

Last Version Date 2024-10-30

Entry Detail

PDB ID:

3QBH

Keywords:

HYDROLASE/HYDROLASE Inhibitor

Title:

Structure based design, synthesis and SAR of cyclic hydroxyethylamine (HEA) BACE-1 inhibitors

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.24 Å

R-Value Free:

0.21

R-Value Work:

0.19

R-Value Observed:

0.20

Space Group:

P 1 21 1

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Beta-secretase 1
Gene (Uniprot):BACE1
Chain IDs:A, B, C
Chain Length:402
Number of Molecules:3
Biological Source:Homo sapiens

UniProt ID:P56817 Pfam ID:PF00026 EC:3.4.23.46

Ligand Molecules

QBH

Primary Citation

Structure based design, synthesis and SAR of cyclic hydroxyethylamine (HEA) BACE-1 inhibitors.

Rueeger, H, Rondeau, J.M, McCarthy, C, Mobitz, H, Tintelnot-Blomley, M, Neumann, U, Desrayaud, S, Machauer, R, Veenstra, S, Rondeau, J.M, Tintelnot-Blomley, M, Betschart, C, Neumann, U, Paganetti, P, Machauer, R, Laumen, K, Veenstra, S, Rondeau, J.M, Tintelnot-Blomley, M, Betschart, C, Jaton, A.-L, Desrayaud, S, Staufenbiel, M, Rabe, S, Paganetti, P, Neumann, U, Lerchner, A, Machauer, R, Betschart, C, Veenstra, S, Rueeger, H, McCarthy, C, Tintelnot-Blomley, M, Jaton, A.-L, Rabe, S, Desrayaud, S, Enz, A, Staufenbiel, M, Paganetti, P, Rondeau, J.M, Neumann, U.Show

Bioorg.Med.Chem.Lett. 21 1942 1947 (2011)

PMID: 21388807 DOI: 10.1016/j.bmcl.2011.02.038

Abstact

This Letter describes the de novo design of non-peptidic hydroxyethylamine (HEA) inhibitors of BACE-1 by elimination of P-gp contributing amide attachments. The predicted binding mode of the novel cyclic sulfone HEA core template was confirmed in a X-ray co-crystal structure. Inhibitors of sub-micromolar potency with an improved property profile over historic HEA inhibitors resulting in improved brain penetration are described.

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Primary Citation of related structures