3Q9T image
Entry Detail
PDB ID:
3Q9T
Keywords:
Title:
Crystal structure analysis of formate oxidase
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2011-01-09
Release Date:
2011-09-21
Method Details:
Experimental Method:
Resolution:
2.24 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Choline dehydrogenase and related flavoproteins
Chain IDs:A, B, C
Chain Length:577
Number of Molecules:3
Biological Source:Aspergillus oryzae
Primary Citation
Formate oxidase, an enzyme of the glucose-methanol-choline oxidoreductase family, has a His-Arg pair and 8-formyl-FAD at the catalytic site.
Biosci.Biotechnol.Biochem. 75 1662 1667 (2011)
PMID: 21897046 DOI: 10.1271/bbb.110153

Abstact

Formate oxidase of Aspergillus oryzae RIB40 contains an 8-replaced FAD with molecular mass of 799 as cofactor. The ¹H-NMR spectrum of the cofactor fraction obtained from the enzyme indicated that the 8-replaced FAD in the fraction was 8-formyl-FAD, present in open form and hemiacetal form. The oxidation-reduction potentials of the open and hemiacetal forms were estimated by cyclic voltammetry to be -47 and -177 mV vs. Normal Hydrogen Electrode respectively. The structure of the enzyme was constructed using diffraction data to 2.24 Å resolution collected from a crystal of the enzyme. His₅₁₁ and Arg₅₅₄ were situated close to the pyrimidine part of the isoalloxazine ring of 8-formyl-FAD in open form. The enzyme had 8-formyl-FAD, the oxidation potential of which was approximately 160 mV more positive than that of FAD, and the His-Arg pair at the catalytic site, unlike the other enzymes belonging to the glucose-methanol-choline oxidoreductase family.

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