3Q9J image
Deposition Date 2011-01-07
Release Date 2011-06-08
Last Version Date 2023-11-15
Entry Detail
PDB ID:
3Q9J
Keywords:
Title:
AIIFL segment derived from Alzheimer's Amyloid-Beta displayed on 42-membered macrocycle scaffold
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.55 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
P 31
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cyclic pseudo-peptide AIIFL(ORN)(HAO)YK(ORN)
Mutagens:G4F
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:10
Number of Molecules:8
Biological Source:
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ORN A ALA L-ORNITHINE
Primary Citation
Characteristics of Amyloid-Related Oligomers Revealed by Crystal Structures of Macrocyclic beta-Sheet Mimics.
J.Am.Chem.Soc. 133 6736 6744 (2011)
PMID: 21473620 DOI: 10.1021/ja200222n

Abstact

Protein amyloid oligomers have been strongly linked to amyloid diseases and can be intermediates to amyloid fibers. β-Sheets have been identified in amyloid oligomers. However, because of their transient and highly polymorphic properties, the details of their self-association remain elusive. Here we explore oligomer structure using a model system: macrocyclic peptides. Key amyloidogenic sequences from Aβ and tau were incorporated into macrocycles, thereby restraining them to β-strands, but limiting the growth of the oligomers so they may crystallize and cannot fibrillate. We determined the atomic structures for four such oligomers, and all four reveal tetrameric interfaces in which β-sheet dimers pair together by highly complementary, dry interfaces, analogous to steric zippers found in fibers, suggesting a common structure for amyloid oligomers and fibers. In amyloid fibers, the axes of the paired sheets are either parallel or antiparallel, whereas the oligomeric interfaces display a variety of sheet-to-sheet pairing angles, offering a structural explanation for the heterogeneity of amyloid oligomers.

Legend

Protein

Chemical

Disease

Primary Citation of related structures