3Q6J image
Deposition Date 2011-01-01
Release Date 2011-02-16
Last Version Date 2023-09-13
Entry Detail
PDB ID:
3Q6J
Keywords:
Title:
Structural basis for carbon dioxide binding by 2-ketopropyl coenzyme M Oxidoreductase/Carboxylase
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.92 Å
R-Value Free:
0.22
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:2-oxopropyl-CoM reductase, carboxylating
Gene (Uniprot):xecC
Chain IDs:A, B
Chain Length:523
Number of Molecules:2
Biological Source:Xanthobacter autotrophicus
Primary Citation
Structural basis for carbon dioxide binding by 2-ketopropyl coenzyme M oxidoreductase/carboxylase.
Febs Lett. 585 459 464 (2011)
PMID: 21192936 DOI: 10.1016/j.febslet.2010.12.035

Abstact

The structure of 2-ketopropyl coenzyme M oxidoreductase/carboxylase (2-KPCC) has been determined in a state in which CO(2) is observed providing insights into the mechanism of carboxylation. In the substrate encapsulated state of the enzyme, CO(2) is bound at the base of a narrow hydrophobic substrate access channel. The base of the channel is demarcated by a transition from a hydrophobic to hydrophilic environment where CO(2) is located in position for attack on the carbanion of the ketopropyl group of the substrate to ultimately produce acetoacetate. This binding mode effectively discriminates against H(2)O and prevents protonation of the ketopropyl leaving group.

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Protein

Chemical

Disease

Primary Citation of related structures