3Q3K image
Entry Detail
PDB ID:
3Q3K
Title:
Factor Xa in complex with a phenylenediamine derivative
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2010-12-22
Release Date:
2011-12-28
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Activated factor Xa heavy chain
Chain IDs:A
Chain Length:233
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Factor X light chain
Chain IDs:B
Chain Length:54
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Design, synthesis and SAR of novel ethylenediamine and phenylenediamine derivatives as factor Xa inhibitors.
Bioorg.Med.Chem.Lett. 21 2133 2140 (2011)
PMID: 21345673 DOI: 10.1016/j.bmcl.2011.01.132

Abstact

We previously reported on a series of cyclohexanediamine derivatives as highly potent factor Xa inhibitors. Herein, we describe the modification of the spacer moiety to discover an alternative scaffold. Ethylenediamine derivatives possessing a substituent at the C1 position in S configuration and phenylenediamine derivatives possessing a substituent at the C5 position demonstrated moderate to strong anti-fXa activity. Further SAR studies led to the identification of compound 30 h which showed both good in vitro activity (fXa IC(50) = 2.2 nM, PTCT2 = 3.9 μM) and in vivo antithrombotic efficacy.

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